Three-dimensional spectral data processing device and processing method

ABSTRACT

When performing an analysis of the difference between a specific sample group and a nonspecific sample group, a principle component analysis processing unit ( 33 ) performs principle component analysis on a collection of a plurality of mass spectrums created from data obtained for a single specific sample, and a characteristic spectrum acquisition unit ( 34 ) acquires a characteristic spectrum for each of a plurality of principle components using factor loadings. A spectrum similarity calculation unit ( 35 ) calculates the similarities between all mass spectrums and the characteristic spectrum for each sample, and obtains a representative value for the same. The similarity representative value for each sample is obtained for all the characteristic spectrums. A difference determination unit ( 36 ) checks whether there is a significant difference between the distribution of the similarity representative values of the specific sample group and the distribution of the similarity representative values of the nonspecific sample group and determines that the characteristic spectrum which is the source of the similarities having a significant difference is a difference spectrum. The difference spectrum reflects component information characterizing a sample group difference, so a component identification unit ( 37 ) searches for the difference spectrum in a library to identify a component. This makes it possible to perform different analysis without performing spectrum peak detection.

TECHNICAL FIELD

The present invention relates to a three-dimensional spectral dataprocessing device and a three-dimensional spectral data processingmethod for processing three-dimensional spectral data from whichspectrums, such as mass spectrums and absorption spectrums, indicatingthe relationship between a predetermined parameter and a signalintensity value can be obtained according to changes of other parameterssuch as a time and a spatial position.

More specifically, it relates to a three-dimensional spectral dataprocessing device and a three-dimensional spectral data processingmethod for performing analysis based on, for example, similarities ordissimilarities of a plurality of three-dimensional spectral dataobtained from different samples.

The present invention is preferably used to process three-dimensionalspectral data obtained by, for example, a Liquid Chromatograph MassSpectrometer (LC-MS), a Gas Chromatograph Mass Spectrometer (GC-MS), aliquid chromatograph using a multichannel type detector such as, e.g., aphotodiode array (PDA) detector, a liquid chromatograph or a gaschromatograph using an ultraviolet-visible spectrophotometer or aninfrared spectrophotometer capable of wavelength scanning as a detector,or an imaging mass spectrometer, etc.

BACKGROUND TECHNIQUE

In a liquid chromatograph mass spectrometer (LC-MS), by repeating a scanmeasurement in a predetermined mass-to-charge ratio m/z range in a massspectrometer as a detector, a mass spectrum indicating a relationshipbetween a mass-to-charge ratio and a signal intensity can be obtainedfrom moment to moment. Further, in a liquid chromatograph using a PDAdetector as a detector, it is possible to obtain an absorption spectrumindicating a relationship between a wave number, a wavelength, etc., anda signal intensity (absorbance) from moment to moment. In thisspecification, data constituting spectrums such as a plurality of massspectrums or absorption spectrums obtained according to changes ofparameters such as time will be referred to as three-dimensionalspectral data.

FIG. 9A is a schematic diagram of three-dimensional spectral dataobtained by an LC-MS. Three-dimensional spectral data in this casedenotes data having three dimensions: a mass-to-charge ratio m/z whichis a unit axis of a mass spectrum; a signal intensity (ion intensity) ofa mass spectrum; and a time (retention time RT).

By the way, in various fields such as biochemistry, food, andenvironmental fields, in order to search for characteristic componentsfrom a complicated sample including multiple components or to examinethe content of the component, differential analysis by profiling(multivariate analysis) is used (see Non-Patent Document 1). Indifference analysis using three-dimensional spectral data obtained fromeach sample, generally, features such as a peak height, a peak area,etc., are initially extracted from three-dimensional spectral data tocreate characteristic data. Then, for the two-dimensional characteristicdata table in which the characteristic data created for each sample isarranged in a table format, multivariate analysis such as principlecomponent analysis is performed, and from the result, the similarities,etc., of multiple samples are grasped.

A conventional method of creating a two-dimensional characteristic datatable from three-dimensional spectral data of a plurality of sampleswill be described. Based on three-dimensional spectral data as shown inFIG. 9A, when the mass spectrum at the retention time RT=0.00, forexample, is extracted, the mass spectrum as shown in FIG. 9B isobtained. For such mass spectrum, peak detection is performed accordingto predetermined conditions, and the height (intensity value) or peakarea (integral value of intensity) of each detected peak is obtained.Then, the mass-to-charge ratio and the peak height (or area) of eachpeak appearing in the mass spectrum are collected as peak information.

By performing the same processing for all mass spectrums obtained overthe entire retention time from the start of measurement to the end ofmeasurement, peak information on all peaks appearing in all massspectrums is obtained. Based on this peak information, as shown in FIG.10, a two-dimensional characteristic data table showing the peak height(or area) for the mass-to-charge ratio and retention time of each peakis created for each sample. In this table, when there is no peak (notdetected) at a certain mass-to-charge ratio and a certain retention timein a certain sample, the peak height corresponding to the mass-to-chargeratio and retention time may be set to zero.

In an LC and a GC (especially LC), even if the composition separationconditions in the column are set to be equal, the retention time of thesame component may sometimes somewhat differs due to factors such as thedifference in measurement environment and systematic errors of thedevice, in other words, a retention time shift may sometimes occur. Forthis reason, prior to creating a two-dimensional characteristic datatable according to the procedure as described above, it is sometimesnecessary to perform alignment processing in the retention timedirection (processing to adjust the retention time) (see Patent Document1).

Multivariate analysis such as principle component analysis is performedusing the two-dimensional characteristic data table created as describedabove, and based on the result, for example, a large number of samplesare classified into a plurality of groups, and further, componentscharacterizing the difference are identified.

PRIOR ART Patent Document

Patent Document 1: Japanese Unexamined Patent application PublicationNo. 2014-202582

Non-Patent Document

Non-Patent Document 1: “Multiprofiling (multivariateanalysis)˜Multivariate analysis enabling profiling and mixed systemquantification˜”, Shimadzu Corporation, [Search on Dec. 18, 2008 (Heisei26)], Internet<URL:http://www.an.shimadzu.co.jp/apl/chemometrics/>

SUMMARY OF THE INVENTION Problems to be Solved by the Invention

As described above, in the conventional difference analysis, whencharacteristic data is obtained from three-dimensional spectral data tocreate a two-dimensional characteristic data table, it is necessary toperform peak detection on spectrum and extract peak information.Therefore, there are the following problems.

(1) For algorithms for detecting peaks in a spectrum waveform, variousalgorithms are known. Even for the same spectrum waveform, peaks to bedetected are different depending on the type of algorithm. Therefore,depending on the type of peak detection algorithm, the obtainedcharacteristic data changes, and therefore the result of multivariateanalysis to the two-dimensional characteristic data table created basedthereon will also differ.

(2) Whatever the algorithm is, it is necessary to set a detectioncondition, such as, e.g., an intensity threshold, when a peak detectionis performed. However, if the condition is inappropriately set, it isimpossible to detect an accurate peak, and therefore there arepossibilities that important peaks are overlooked or peaks which are notoriginally peaks are erroneously detected.

(3) If the number of peaks appearing in a spectrum is too many, the dataamount of the two-dimensional characteristic data table becomesenormous, and therefore appropriate results may not be obtained bymultivariate analysis.

(4) In the system using an LC and a GC, in order to perform accuratepeak detection in the spectrum unit, alignment processing in theretention time direction is necessary as described above. If suchalignment processing is insufficient, the two-dimensional characteristicdata table becomes inaccurate, and therefore appropriate results cannotbe obtained by multivariate analysis. To avoid this, an analysthimself/herself has to confirm three-dimensional spectral data or atwo-dimensional characteristic data table and correct it manually.

The above problems are mainly caused by peak detection in spectrumunits. The present invention was made to solve such problems. It is anobject of the present invention to provide a three-dimensional spectraldata processing device and processing method capable of obtaining anaccurate multivariate analysis result based on a plurality ofthree-dimensional spectral data without performing peak detection inspectrum units.

Means for Solving the Problems

A three-dimensional spectral data processing device according to thepresent invention to solve the aforementioned problems is configured toprocess three-dimensional spectral data constituting a plurality ofspectrums each indicating a relationship between a first parameter and asignal intensity and obtained in accordance with a change of a secondparameter, the three-dimensional spectral data processing device beingconfigured to analyze similarity or difference between respectivethree-dimensional spectral data obtained from a plurality of samples.The three-dimensional spectral data processing device includes:

a) a characteristic spectrum acquisition unit configured to performmultivariate analysis by considering a plurality of spectrumsconstituting a single three-dimensional spectral data obtained from aspecific sample among a plurality of samples as a collection of a singlespectrum not depending on a value of the second parameter, and based ona result of the multivariate analysis, one or a plurality ofcharacteristic spectrums that characterize the specific sample isobtained;

b) a spectrum similarity calculation unit configured to calculate asimilarity between each spectrum for each second parameter valueextracted from the three-dimensional spectral data for a single sampleand a single characteristic spectrum for each of the one or theplurality of characteristic spectrums obtained by the characteristicspectrum acquisition unit for each of three-dimensional spectral datafor a plurality of samples and calculate a representative value of thesimilarity corresponding to the sample from the plurality ofsimilarities; and

c) a difference spectrum determination unit configured to check whetheror not there is a significant difference capable of distinguishingbetween a specific sample and a nonspecific sample based on therepresentative value of the similarity obtained respectivelycorresponding to a plurality of samples for each of the characteristicspectrums and determine the characteristic spectrum capable of obtainingthe similarity with a significant difference as a difference spectrum.

A three-dimensional spectral data processing method according to thepresent invention to solve the aforementioned problems is configured toprocess three-dimensional spectral data constituting a plurality ofspectrums each indicating a relationship between a first parameter and asignal intensity and obtained in accordance with a change of a secondparameter, the three-dimensional spectral data processing method beingconfigured to analyze similarity or difference between respectivethree-dimensional spectral data obtained from a plurality of samples.The three-dimensional spectral data processing method includes:

a) a characteristic spectrum acquisition step of performing multivariateanalysis by considering a plurality of spectrums constituting a singlethree-dimensional spectral data obtained from a specific sample among aplurality of samples as a collection of a single spectrum not dependingon a value of the second parameter, and based on a result of themultivariate analysis, obtaining one or a plurality of characteristicspectrums that characterize the specific sample;

b) a spectrum similarity calculation step of calculating a similaritybetween each spectrum for each second value extracted from thethree-dimensional spectral data for a single sample and a singlecharacteristic spectrum for each of the one or the plurality ofcharacteristic spectrums obtained in the characteristic spectrumacquisition step for each of three-dimensional spectral data for aplurality of samples and calculating a representative value of thesimilarity corresponding to the sample from the plurality ofsimilarities; and

c) a difference spectrum determination step of checking whether or notthere is a significant difference capable of distinguishing between aspecific sample and a nonspecific sample based on the representativevalue of the similarity obtained respectively corresponding to aplurality of samples for each of the characteristic spectrums anddetermining the characteristic spectrum capable of obtaining thesimilarity with the significant difference as a difference spectrum.

The “three-dimensional spectral data” described herein denotes, forexample, data representing a large number of mass spectrums (includingMS^(n) spectrums in which n is 2 or more) obtained with the lapse oftime in an LC-MS or a GC-MS, data representing a large number of massspectrums obtained from a number of different (i.e., different spatialpositions) measurement points on a sample in an imaging massspectrometer, data representing a number of absorbance spectrumsobtained with the laps of time in an LC using a PDA detector or aUV-visible spectrophotometer capable of wavelength scanning, datarepresenting a number of absorbance spectrums obtained with the laps oftime in a GC using an infrared spectrophotometer as a detector, etc.

In the three-dimensional spectral data processing device according tothe present invention, since difference analysis of a plurality ofsamples is performed, three-dimensional spectral data obtained bymeasuring each of the plurality of samples is given. However, additionalinformation that one of the plurality of samples is a specific samplecontaining, for example, a specific component is given separately. Thatis, this is supervised difference analysis.

The characteristic spectrum acquisition unit considers a plurality ofspectrums generated from a single three-dimensional spectral dataderived from the specific sample specified by the additional informationas a single spectrum collection independent of the value of the secondparameter, and performs predetermined multivariate analysis for it. Forexample, when the three-dimensional spectral data is data obtained by anLC-MS, at the stage of creating a collection of spectrums, informationon the second parameter value (corresponding to retention time in anLC-MS) of each mass spectrum is discarded. The multivariate analysisused is typically principle component analysis (PCA), but it is notlimited to this. Non-negative matrix factorization (NMF), multivariatecurve resolution (MCR), etc., may be used. When principle componentanalysis is performed on spectrum data collection, derived factorloading is obtained for each first parameter value (e.g., amass-to-charge ratio) for each derived principal component. Therefore,the relationship between the first parameter and the factor loadingamount can be taken as the characteristic spectrum, and therefore thecharacteristic spectrum is obtained by the number of principlecomponents. In this case, it may be configured such that the principlecomponent number be determined automatically based on the cumulativecontribution ratio, etc., or an analyst determine the appropriate numberof principle components and sets it by an input operation from the inputunit.

Normally, since a plurality of characteristic spectrums are obtained,the spectrum similarity calculation unit calculates the similaritybetween each spectrum at each measurement time extracted from thethree-dimensional spectral data to a single sample and a characteristicspectrum for each of three-dimensional spectral data with respect to aplurality of samples for each characteristic spectrum. Therefore, in onesample, the similarity for a single characteristic spectrum is obtainedby the number of spectrums. Therefore, from the plurality ofsimilarities, a representative value of similarity related to a singlecharacteristic spectrum is calculated in one sample. The representativevalue may be, for example, an average value, a median value, a modevalue, a sum value, or a maximum value of a plurality of similarities.As a result, for each sample, the representative value of similarity isobtained by the number of characteristic spectrums for each sample.

Based on the representative value of similarity obtained as describedabove, the difference spectrum determination unit investigates whetherthere is a significant difference capable of discriminating between aspecific sample and a nonspecific sample contained in a plurality ofgiven samples. The determination of the presence or absence of thesignificant difference can be made, for example, by using varioushypothesis test methods in statistics. It is assumed that acharacteristic spectrum showing a distribution in which there is asignificant difference between the distribution of the representativevalue of the similarity of the specific sample group and thedistribution of the representative value of the similarity of thenonspecific sample group contains information related to the componentcorresponding to the difference. Therefore, the difference spectrumdetermination unit determines the characteristic spectrum capable ofobtaining the similarity with a significant difference as a differencespectrum reflecting the difference between the specific sample and thenonspecific sample.

For example, it is presumed that a peak showing large intensity in thedifference spectrum is derived from a characteristic component includedin the specific sample but not included in the nonspecific sample.Therefore, for example, an analyst finds the mass-to-charge ratiocorresponding to the peak of large intensity from the differencespectrum displayed on the display screen, and estimates the componentfrom its mass-to-charge ratio. Of course, it is preferable that suchcomponent estimation can be done automatically.

That is, it is preferable that the three-dimensional spectral dataprocessing device according to the present invention further include adatabase that stores information on compounds; and a componentidentification unit configured to perform component identification bycollating information obtained from the difference spectrum determinedby the difference spectrum determination unit with information in thedatabase.

As the database, a general-purpose compound database storing variouscompounds can be used. Further, in the case of performing analysis for aspecific purpose in which the type of sample is limited, it ispreferable to use a database storing compounds corresponding to thepurpose. According to the above configuration, even if a componentcharacterizing a specific sample is unknown, such a component can beautomatically specified by difference analysis.

Further, in the three-dimensional spectral data processing deviceaccording to the present invention, it may be configured to furtherinclude a display configured to display the difference spectrumdetermined by the difference spectrum determination unit and thedistribution status of representative values of similarity in allsamples for the difference spectrum.

According to the configuration, an analyst can not only visuallyrecognize the difference spectrum presumed to correspond to thecomponent characterizing the specific sample, but also judge thereliability of the difference spectrum from the distribution situationof the similarity representative values.

Effects of the Invention

According to the three-dimensional spectral data processing device andprocessing method of the present invention, without detectingcharacteristic data by performing peak detection on three-dimensionalspectral data as in the past, it is possible to accurately performdifference analysis on two groups: a specific sample groups including aspecific component; and a sample group not including the specificcomponent, and search the spectrum corresponding to the component.Therefore, it is possible to avoid an error of difference analysis dueto a difference of kinds of peak detection algorithms, inappropriatesetting of peak detection condition, etc. The accuracy of componentestimation using the spectrum obtained with difference analysis can alsobe improved.

Further, in the three-dimensional spectral data processing device andprocessing method according to the present invention, since a secondparameter such as a retention time, etc., is not taken into account whendetermining the characteristic spectrum, no alignment processing isrequired for aligning the retention time among a plurality of sampleswhich are normally required when obtaining a two-dimensionalcharacteristic data table including characteristic data for a pluralityof samples, and the time and effort required for such processing can besaved. As a result, the throughput of the whole difference analysis canbe improved.

BRIEF DESCRIPTION OF THE DRAWINGS

FIG. 1 is a schematic configuration diagram of an example of an LC-MSsystem equipped with a three-dimensional spectral data processing deviceaccording to the present invention.

FIG. 2 is a conceptual diagram of difference analysis.

FIG. 3 is a flowchart showing a procedure of characteristic spectrumacquisition processing in the LC-MS system of the present embodiment.

FIG. 4 is a flowchart showing a procedure of spectrum similaritycalculation processing in the LC-MS system of the present embodiment.

FIG. 5 shows a similarity representative value table obtained by thespectrum similarity calculation processing.

FIG. 6 is a flowchart showing a procedure of difference spectrumdetermination processing in the LC-MS system of the present embodiment.

FIG. 7 is an explanatory diagram of characteristic spectrum acquisitionprocessing and spectrum similarity calculation processing.

FIG. 8 shows a display example of similarity distributions of allsamples.

FIG. 9A is a schematic diagram of three-dimensional mass spectrum dataobtained by an LC-MS, and FIG. 9B is a diagram showing one massspectrum.

FIG. 10 is an example of a two-dimensional characteristic data tablecreated based on three-dimensional mass spectrum data.

EMBODIMENT FOR CARRYING OUT THE INVENTION

An embodiment of an LC-MS system equipped with a three-dimensionalspectral data processing device according to the present invention willbe described with reference to the accompanying drawings.

In the LC-MS system of the present embodiment, although not shown, an LCunit 1 includes a liquid feeding pump for feeding a mobile phase at aconstant flow rate, an injector for injecting a sample into the mobilephase to be fed, a column for separating components in the sample in thetime direction, and the like. Further, the MS unit 2 is, for example, atime-of-flight mass spectrometer equipped with an electrospray ionsource. Samples containing components separated in the time direction inthe LC unit 1 are sequentially introduced into the MS unit 2. In the MSunit 2, ions derived from components contained in the sample to beintroduced are detected.

The detection signal obtained by the MS unit 2 is input to a dataprocessing unit 3. In order to perform characteristic processing to bedescribed later, the data processing unit 3 includes, as functionalblocks, a data collection processing unit 31, a data storage unit 32, aprinciple component analysis processing unit 33, a characteristicspectrum acquisition unit 34, a spectrum similarity calculation unit 35,a difference spectrum determination unit 36, a component identificationunit 37, and a spectrum library 38. To this data processing unit 3, aninput unit 4 for conducting various input operations by an analyst and adisplay unit 5 for displaying processing results, etc., are connected.Most of the functions of the data processing unit 3 can be realized byoperating dedicated data processing software installed in a personalcomputer.

In the LC-MS system of this embodiment, by performing a measurement onthe sample at the measuring unit including the LC unit 1 and the MS unit2, as the time elapses from the time when the sample is introduced intothe LC unit 1, detection signals can be obtained. The data collectionprocessing unit 31 converts the input detection signals into digitaldata and stores them in the data storage unit 32. Three-dimensional massspectrum data as shown in, for example, FIG. 7A (the same as FIG. 9A) isobtained by the measurement with respect to one sample. In the case ofperforming comprehensive analysis by multivariate analysis, measurementsare performed on a large number of samples as analysis objects,respectively, and three-dimensional mass spectrum data corresponding toeach sample is stored in the data storage unit 32.

Characteristic data processing in the LC-MS system of this embodiment,which is executed in a state in which the three-dimensional massspectrum data corresponding to a plurality of samples is stored in thedata storage unit 32 as described above, will be described.

FIG. 2 is a conceptual diagram of the difference analysis assumed here.

A number of samples to be measured include samples a1, a2, . . . , whichare known that specific components are contained and samples b1, b2, . .. , which are known that no specific components are contained. As shownin the figure, these samples are classified into a specific sample groupand a nonspecific sample group, and it is assumed that each sample islabeled as belonging to one of the groups. However, it is unknown whatthe specific component is. Here, the purpose of the analysis is to makedifference analysis between samples contained in two groups, a specificsample group and a nonspecific sample group, to identify the componentcharacterizing the difference, that is, the aforementioned specificcomponent.

FIG. 3 is a flowchart showing a procedure of characteristic spectrumacquisition processing. FIG. 4 is a flowchart showing a procedure ofspectrum similarity calculation processing. FIG. 6 is a flowchartshowing a procedure of difference spectrum processing. Further, FIG. 7is an explanatory diagram of characteristic spectrum acquisitionprocessing and spectrum similarity calculation processing. FIG. 5 is adiagram showing a similarity representative value table obtained by thespectrum similarity calculation processing.

For example, when an analyst instructs execution of the differenceanalysis from the input unit 4, in the data processing unit 3,characteristic spectrum acquisition processing is performed in theprocedure shown in FIG. 3.

That is, the principle component analysis processing unit 33 reads outthree-dimensional mass spectrum data corresponding to one of the sampleslabeled with a specific sample group from the data storage unit 32 andperforms principle component analysis on this data (Step S11). It isdesirable that one sample selected here be a sample presumed to be mostspecific. Therefore, it is advisable that an analyst can specify fromthe input unit 4 which specific sample to select. As shown in FIG. 7A,the three-dimensional mass spectrum data obtained from the data storageunit 32 includes retention time RT information. However, when principlecomponent analysis is performed in Step S11, three-dimensional massspectrum data is regarded as a collection of simple mass spectrum datairrelevant to retention time (see FIG. 7B). At this point, theinformation on retention time is discarded from the three-dimensionalmass spectrum data.

The principle component analysis processing unit 33 does not decide thenumber of principle components in advance and determines the principlecomponent number PC based on the cumulative contribution ratio obtainedby the principle component analysis (Step S12). By the principlecomponent analysis, the factor loading amount (principle componentloading) for each principle component from the first principle componentto the PC principle component is calculated for each mass-to-chargeratio. The characteristic spectrum acquisition unit 34 creates spectrums(see FIG. 7C) in which the factor loadings are arranged on themass-to-charge ratio axis for each principle component and sets ascharacteristic spectrums L1 to L_(PC) of the specific sample (Step S13).By performing the principle component analysis, it is possible toextract features of the three-dimensional mass spectrum data in thespecific sample based on statistics, information of the specificcomponent should be reflected in at least one of the PC characteristicspectrums. At this point, since it is unknown which factor loading forany principle component contains the information of the specificcomponent, what is obtained in Step S13 is a spectrum that maycharacterize the difference between the specific sample and thenonspecific sample.

In this embodiment, the principle component analysis, which is onemethod of multivariate analysis, is applied to the mass spectrumcollection obtained from the three-dimensional mass spectrum data.However, the method which can be adopted here is not limited toprinciple component analysis. For example, nonnegative matrixfactorization (NMF), multivariate curve resolution (MCR), etc., may beused. Care must be taken in principle component analysis because factorloading may sometimes become a negative value in some cases. However, inmultivariate curve resolution, etc., factor loading always becomes apositive value, so it is rather convenient to create a characteristicspectrum.

In the data processing unit 3, spectrum similarity calculationprocessing is subsequently performed in the procedure shown in FIG. 4.That is, the spectrum similarity calculation unit 35 sets the variablepc designating the principle component to 1 (Step S21), and sets thecharacteristic spectrum Lpc which is a reference for similaritycalculation (Step S22). Next, the variable n designating the sample isset to 1 (Step S23), and the three-dimensional mass spectrum dataobtained from the n^(th) sample is set as the data of the analysisobject (Step S24). Here, to all of the sample a1, a2, . . . , b1, b2,consecutive numbers are allotted in advance.

Next, the variable t designating the retention time is set to 0 (StepS25), and the mass spectrum St at the retention time t in thethree-dimensional mass spectrum data derived from the n^(th) sample, andthe similarity Corr_(t) between the mass spectrum St and thecharacteristic spectrum Lpc is calculated (Step S26). This similarityCorr_(t) can be calculated, for example, based on the difference insignal intensity value for each mass-to-charge ratio. In addition, evenin cases where the measurement conditions are the same, if the samplesare different, the detection sensitivity may be different in some cases.Therefore, before calculating the similarity, for example, it may beconfigured such that the signal intensity value in one or both spectrumsare standardized so that the signal intensity value in a specificmass-to-charge ratio and the signal intensity value with the maximumintensity are aligned.

When the similarity Corr_(t) between the two spectrums is obtained, itis judged whether or not the variable t has reached the measurement endtime T (Step S27). If the variable t has not reached the measurement endtime T, the value obtained by adding a data measurement time interval Δtto the variable t is set as a new variable t (Step S 28), and theprocess returns to Step S 26. Therefore, by repeating Steps S26, S27,and S28, for the specified n^(th) sample, the similarity Com between thecharacteristic spectrums Lpc will be calculated for all mass spectrumsobtained from the variable t from 0 to the measurement end time T, thatis, during the entire measurement period from the measurement start timeto the measurement end time. As a result, the same number ofsimilarities Corr_(t) as the number of measurement points is obtained(see FIG. 7D).

When it is determined as “Yes” in Step S27, the spectrum similaritycalculation unit 35 calculates and stores the representative value Vn ofsimilarity based on all similarities Corr_(t) equal to the number ofmeasurement points obtained for the n^(th) sample (Step S29). Therepresentative value Vn is an average value, a median value, a modevalue, a sum value, a maximum value, or the like, of all similarities.For example, when n=1 and pc=1, one representative value in the frame100 enclosed by the solid line in the table shown in FIG. 5 is obtained.

Subsequently, it is determined whether or not the variable n designatingthe sample has reached the total sample number N (Step S30). If not, thevariable n is incremented (Step S31) and the process returns to StepS24. Therefore, by repeating steps S24 to S31, for each of all Nsamples, a representative value Vn of similarity between a mass spectrumbased on three-dimensional mass spectrum data obtained from each sampleand one characteristic spectrum Lpc can be obtained. For example, whenpc=1, N similarity representative values in the frame 101 surrounded bythe one-dot chain line in the table shown in FIG. 5 are obtained.

When it is determined as “Yes” in step S30, next, it is judged whetheror not the variable pc designating the principle component has reachedthe principle component number PC (Step S32). If not, the variable pc isincremented (Step S33) and the process returns to Step S22. Therefore,by repeating Steps S22 to S33, a similarity representative valuecorresponding to each of N samples is obtained for each of the PCcharacteristic spectrum Lpc. That is, similarity representative valuesfor (N×PC) number in the frame 102 enclosed by the two-dot chain line inthe table shown in FIG. 5, that is, all combinations of samples andcharacteristic spectrums are obtained. Thus, the similarityrepresentative value table shown in 5 is completed. It is obvious that aprocedure different from the procedure shown in FIG. 4 can be used toobtain each similarity representative value that fills the similarityrepresentative value table as described above.

Further, in the data processing unit 3, difference spectrum processingis performed according to the procedure shown in FIG. 6. That is, thedifference determination unit 36 first sets the variable pc designatingthe principle component to 1 (Step S41). Then, using the similarityrepresentative value in the similarity representative value tabledescribed above, it is determined whether there is a significantdifference in the distribution of the similarity representative valuesfor the characteristic spectrum Lpc between the two sample groups: thespecific sample group and the nonspecific sample group (Step S42).

Conventionally known various statistical hypothesis tests may be used tojudge the presence or absence of this significant difference.

When it is determined that there is a significant difference in thedistribution of the similarity representative values corresponding tothe two sample groups by the above test (Yes in Step S43), thecharacteristic spectrum Lpc at that time is determined as the differencespectrum for the two sample groups (Step S44). On the other hand, whenit is determined that there is no significant difference in thedistribution of similarity representative values in Step S43, theprocess of Step S44 is passed. Then, it is determined whether or not thevariable pc designating the principle component has reached theprinciple component number PC (Step S45). If not, the variable pc isincremented (Step S46) and the process returns to Step S42. Therefore,by repeating Steps S42 to S46, for each of the PC characteristicspectrums Lpc, it is judged whether or not there is a significantdifference in the distribution of similarity representative values. Oneor more characteristic spectrums judged to have significant differencesare determined as a difference spectrum. As mentioned above, thisdifference spectrum is considered to be a spectrum including informationcharacterizing a specific component included in the specific sample butnot included in the nonspecific sample.

Therefore, the component identification unit 37 determines whether ornot the spectrum library 38 is available (Step S47). If available, itidentifies the specific component by collating one or more differingspectrums with information in the spectrum library 38 (Step S48). Atthis time, the mass spectrum pattern (that is, the mass-to-charge ratioof multiple peaks in the mass spectrum) may be checked. However, it maybe simply configured such that a mass-to-charge ratio corresponding to aspecific peak having a large intensity is obtained from the differencespectrum and is collated with the mass of the compound contained in thespectrum library 38. As such a spectrum library 38, for example, ageneral-purpose compound database such as Pubchem operated by theNational Bioinformatics Center of the United States may be used.Alternatively, a library that contains only specific compounds providedby equipment manufacturers or created by the user himself/herself may beused.

Then, when the component can be identified, the identification result isdisplayed on the screen of the display unit 5 together with thedifference spectrum. Also, if ingredient identification is not possible,it is displayed so. Furthermore, if the spectrum library 38 cannot beused for some reason, only the difference spectrum is displayed (StepS49). In this way, according to the LC-MS system of this embodiment, itis possible to provide analysts with information on difference spectrumsderived by difference analysis for two sample groups and information onspecific components derived from the difference spectrums.

By creating and displaying a graph showing the distribution of thesimilarities of all the samples as well as the difference spectrums, itis possible for an analyst to intuitively and easily confirm whether ornot the difference spectrum determined in Step S44 is appropriate foridentifying a plurality of sample groups.

FIG. 8 is an example of a graph showing the distribution of similaritiesof all samples to the characteristic spectrums of the first to thirdprinciple components. In this example, only the characteristic spectrumof the third principle component was determined as the differencespectrum by the test of Step S42. Looking at the distribution ofsimilarities in this third principle component, it can be confirmed alsoby an analyst that the nonspecific samples and the specific samples areclearly separated and therefore the determined difference spectrum isappropriate.

It should be noted that the above-described embodiments are mereexamples of the present invention, and it is obvious that even ifappropriate modifications, additions and modifications are added withinthe scope of the spirit of the present invention, it is encompassedwithin the claims of the present invention.

For example, although the above-described embodiment is applied to thedata obtained by an LC-MS according to the present invention, in aGC-MS, an LC using a PDA detector or a UV-visible spectrophotometercapable of wavelength scanning, a GC using an infrared spectrophotometeras a detector, it is obvious that it can be applied to data constitutingthe spectrum which is sequentially obtained with the lapse of time.Further, in the imaging mass spectrometer, the present invention canalso be used in processing data obtained from a large number ofmeasurement points having different spatial positions.

DESCRIPTION OF REFERENCE SYMBOLS

-   1: LC unit-   2: MS unit-   3: data processing unit-   31: data collection processing unit-   32: data storage unit-   33: principle component analysis processing unit-   34: characteristic spectrum acquisition unit-   35: spectrum similarity calculation unit-   36: difference spectrum determination unit-   37: component identification unit-   38: spectrum library-   4: input unit-   5: display unit

1. A three-dimensional spectral data processing device configured toprocess three-dimensional spectral data constituting a plurality ofspectrums each indicating a relationship between a first parameter and asignal intensity and obtained in accordance with a change of a secondparameter, the three-dimensional spectral data processing device beingconfigured to analyze similarity or difference between respectivethree-dimensional spectral data obtained from a plurality of samples,the three-dimensional spectral data processing device comprising: a) acharacteristic spectrum acquisition unit configured to performmultivariate analysis by considering a plurality of spectrumsconstituting a single three-dimensional spectral data obtained from aspecific sample among a plurality of samples as a collection of a singlespectrum not depending on a value of the second parameter, and based ona result of the multivariate analysis, one or a plurality ofcharacteristic spectrums that characterize the specific sample isobtained; b) a spectrum similarity calculation unit configured tocalculate a similarity between each spectrum for each second parametervalue extracted from the three-dimensional spectral data for a singlesample and one characteristic spectrum for each of the one or theplurality of characteristic spectrums obtained by the characteristicspectrum acquisition unit for each of three-dimensional spectral datafor a plurality of samples and calculate a representative value of thesimilarity corresponding to the sample from the plurality ofsimilarities; and c) a difference spectrum determination unit configuredto check whether or not there is a significant difference capable ofdistinguishing between a specific sample and a nonspecific sample basedon the representative value of the similarity obtained respectivelycorresponding to a plurality of samples for each of the characteristicspectrums and determine the characteristic spectrum capable of obtaininga similarity with the significant difference as a difference spectrum.2. The three-dimensional spectral data processing device as recited inclaim 1, further comprising: a database that stores information oncompounds; and a component identification unit configured to performcomponent identification by collating information obtained from thedifference spectrum determined by the difference spectrum determinationunit with information in the database.
 3. The three-dimensional spectraldata processing device as recited in claim 1, further comprising: adisplay configured to display the difference spectrum determined by thedifference spectrum determination unit and a distribution status of therepresentative values of the similarities in all samples for thedifference spectrum.
 4. A three-dimensional spectral data processingmethod configured to process three-dimensional spectral dataconstituting a plurality of spectrums each indicating a relationshipbetween a first parameter and a signal intensity and obtained inaccordance with a change of a second parameter, the three-dimensionalspectral data processing method being configured to analyze similarityor difference between respective three-dimensional spectral dataobtained from a plurality of samples, the three-dimensional spectraldata processing method comprising: a) a characteristic spectrumacquisition step of performing multivariate analysis by considering aplurality of spectrums constituting a single three-dimensional spectraldata obtained from a specific sample among a plurality of samples as acollection of a single spectrum not depending on a value of the secondparameter, and based on a result of the multivariate analysis, obtainingone or a plurality of characteristic spectrums that characterize thespecific sample; b) a spectrum similarity calculation step ofcalculating a similarity between each spectrum for each second valueextracted from the three-dimensional spectral data for one sample andone characteristic spectrum for each of the one or the plurality ofcharacteristic spectrums obtained in the characteristic spectrumacquisition step for each of three-dimensional spectral data for aplurality of samples and calculating a representative value of thesimilarity corresponding to the sample from the plurality ofsimilarities; and c) a difference spectrum determination step ofchecking whether or not there is a significant difference capable ofdistinguishing between a specific sample and a nonspecific sample basedon the representative value of the similarity obtained respectivelycorresponding to a plurality of samples for each of the characteristicspectrums and determining the spectrum capable of obtaining thesimilarity with the significant difference as a difference spectrum. 5.The three-dimensional spectral data processing method as recited inclaim 4, further comprising: a component identifying step of performingcomponent identification by collating information obtained from thedifference spectrum determined in the difference spectrum determiningstep with information in database containing information on compounds.6. The three-dimensional spectral data processing method as recited inclaim 4, further comprising: a display processing step of displaying thedifference spectrum determined in the difference spectrum determiningstep and a distribution status of the representative values ofsimilarities in all samples for the difference spectrum by a displayunit.